rs12586644 chr14:96195419 C>T
- Sequence
gaggtctgagcatttttatggggg[C/T]caaatcaggatctggctgaagcac
- ASB in cell types
- breast tumor GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXA1_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 3.03 | -5.36 | 2.00 | n/a | No Hit | |||
| COT1_HUMAN | -2.00 | 2.37 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), chronic kidney disease, college completion, ldl cholesterol