rs12589444 chr14:70641222 C>G

Sequence
taaatggaaactagaccggacgca[C/G]gccaagccgatgacccacagtaac
ASB in cell types
breast tumor GM19238 (female B-cells lymphoblastoid cell lines)
ASB for transcription factors
STAG1_HUMAN ESR1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.98 -0.30 0.021.00 1.00 n/a n/a
ESR1_HUMAN 2.31 -0.48 0.021.00 2.00 n/a No Hit
CTCF_HUMAN 1.23 0.77 0.040.92 1.07 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Pancreas,  Pituitary,  Testis,  Whole_Blood

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