rs12591418 chr15:78048197 A>C

Sequence
agggaccagagaccagggaggaac[A/C]cgttggaggaaaatttctaaaagt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SPI1_HUMAN IKZF1_HUMAN IKZF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.75 1.18 1.001.4·10-4 1.67 n/a No Hit
IKZF1_HUMAN -1.27 2.27 1.001.7·10-3 1.00 n/a No Hit
IKZF2_HUMAN -1.97 2.47 1.009.4·10-3 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  systolic blood pressure (sbp),  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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