rs12610715 chr19:18762107 A>G
- Sequence
gctgcaggtacccctgccccgcat[A/G]gaagccaccatctcccagcccctg
- ASB in cell types
- keratinocytes 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.77 | -4.64 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.21 | -1.46 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, cystatin c in serum, irritible bowel syndrome, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (broad definition) (males), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), major depressive disorder (narrow definition) (males), microalbuminuria, primary rhegmatogenous retinal detachment, serum creatinine, sporadic creutzfeldt-jakob disease, variant creutzfeldt-jakob disease
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Lung, Nerve_Tibial, Whole_Blood