rs12615873 chr2:70258449 G>C

Sequence
acttcagggcggctttcagctctg[G/C]tcggaataggactgtgcattccca
ASB in cell types
K562 (myelogenous leukemia) GM02610 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN NRF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.54 -1.75 0.041.00 2.00 n/a No Hit
NRF1_HUMAN -0.63 1.04 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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