rs12619125 chr2:190534475 G>A
- Sequence
cagtgggcctcgcggtgccgcccg[G/A]gccaaagagcgcgccctcagggca
- ASB in cell types
- SUM159PT (Triple negative breast cancer) A549 (lung carcinoma) breast tumor
- ASB for transcription factors
- TYY1_HUMAN CTCF_HUMAN RBM25_HUMAN SMAD3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.32 | -0.68 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.29 | 1.01 | 1.30 | n/a | No Hit | |||
| RBM25_HUMAN | 2.63 | 0.85 | 2.00 | n/a | n/a | |||
| SMAD3_HUMAN | -0.47 | 2.03 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.14 | 1.08 | 2.04 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Vagina, Whole_Blood