rs12619479 chr2:38274823 A>T
- Sequence
tgggcttcatctgccccctgctgt[A/T]ctctaggtaaataacaggacttat
- ASB in cell types
- A549 (lung carcinoma) neutrophils from periferal blood GM18486 (Lymphoblastoid Cell Lines) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SMC3_HUMAN CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 0.56 | 1.65 | 1.26 | n/a | n/a | |||
| CTCF_HUMAN | 0.49 | 0.90 | 1.34 | 0.96 | Weak Concordant | |||
| STAG1_HUMAN | 0.05 | 0.35 | 1.06 | n/a | n/a |
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Motif analysis
