rs12624502 chr20:63850867 C>T
- Sequence
tgcggtaaatgaggtggcagcgac[C/T]gcggccgtcagcagtgatgcagcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- E2F8_HUMAN HTF4_HUMAN KLF5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F8_HUMAN | -2.78 | 2.99 | 1.00 | n/a | n/a | |||
| HTF4_HUMAN | -1.55 | 1.83 | 1.00 | n/a | No Hit | |||
| KLF5_HUMAN | -2.33 | 2.58 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid