rs126907 chr20:50113140 C>G

Sequence
tggtggctgccatcttgcgtcgct[C/G]ttgcttgaaggccggccccttctt
ASB in cell types
22RV1 (prostate carcinoma) K562 (myelogenous leukemia) GM12890 (Lymphoblastoid Cell Lines) WA01 (H1, human embryonic stem cells)
ASB for transcription factors
ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -2.32 3.39 1.004.7·10-5 2.00 n/a No Hit
CTCF_HUMAN 0.49 1.88 1.006.6·10-5 1.95 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Nerve_Tibial,  Whole_Blood

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