rs12729920 chr1:40979451 G>A

Sequence
ggagaccgctgtgggaggacgcga[G/A]gccaggtgacgaataggccaggcg
ASB in cell types
22RV1 (prostate carcinoma) T98G (Glioblastoma)
ASB for transcription factors
ANDR_HUMAN TF3C2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.22 -0.75 0.011.00 2.00 n/a No Hit
TF3C2_HUMAN 1.11 -0.28 0.031.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Testis,  Whole_Blood

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