rs12752674 chr1:53541939 T>C
- Sequence
cacaggtctgtaatccacagctcc[T/C]cctgtggccagtgatgatggcacc
- ASB in cell types
- GM02630 (Fanconi anemi) K562 (myelogenous leukemia) neural progenitors HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN MEIS2_HUMAN ARI1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.03 | 2.40 | 1.63 | 2.27 | Concordant | |||
| MEIS2_HUMAN | -2.92 | 2.81 | 1.00 | n/a | No Hit | |||
| ARI1A_HUMAN | n/a | 2.26 | 2.00 | n/a | n/a |
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Motif analysis
