rs12752760 chr1:58755672 C>T
- Sequence
tttctgaagaggaagccgtagtgc[C/T]gtggacttcaccacgtgcacagtg
- ASB in cell types
- HKC8 (kidney proximal tubule cell line) RCC 7860 (Renal cell carcinoma)
- ASB for transcription factors
- ARNT_HUMAN E2F8_HUMAN HIF1A_HUMAN EPAS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 3.26 | -2.92 | 1.00 | n/a | No Hit | |||
| E2F8_HUMAN | 1.19 | -0.92 | 1.00 | n/a | n/a | |||
| HIF1A_HUMAN | 1.65 | -0.83 | 1.00 | n/a | No Hit | |||
| EPAS1_HUMAN | 0.90 | -0.68 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic