ADASTRA v5.1.3
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rs12757307
chr1:92934792
G
>
A
Sequence
caaaattaaacagacatccctagg[G/A]atacagatttgccaagagagttcc
ASB in cell types
HEK293 (embryonic kidney)
HEK293-A
SK-N-SH (neuroblastoma)
ASB for transcription factors
MEF2B_HUMAN
ZN629_HUMAN
PRDM6_HUMAN
COE3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN
2.33
-4.79
2.5·10
-6
1.00
2.50
n/a
No Hit
ZN629_HUMAN
3.72
n/a
4.2·10
-5
1.00
2.00
n/a
n/a
PRDM6_HUMAN
2.04
n/a
4.0·10
-3
1.00
2.00
n/a
No Hit
COE3_HUMAN
2.37
-4.16
5.2·10
-3
1.00
1.50
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
height
,
ldl cholesterol
,
serum creatinine
,
total cholesterol
,
years of education
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Stomach
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)