rs12759775 chr1:3796513 G>T
- Sequence
gctggcaggcacccacccaccagg[G/T]tgcttccggggcagcgcgcgccac
- ASB in cell types
- primary B-CLL cells 22RV1 (prostate carcinoma) NRCC RH41(Alveolar rhabdomyosarcoma)
- ASB for transcription factors
- BRD4_HUMAN CTCF_HUMAN ANDR_HUMAN ZHX2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 3.21 | 0.95 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.02 | 0.44 | 1.13 | -0.37 | Weak Concordant | |||
| ANDR_HUMAN | 2.60 | -1.82 | 2.00 | n/a | No Hit | |||
| ZHX2_HUMAN | 1.73 | -0.77 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid