rs12769780 chr10:86939677 C>A
- Sequence
tccgccgcagagagagacccccac[C/A]ccaacccagccttgcgcctgacag
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) MCF7 (Invasive ductal breast carcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) liver
- ASB for transcription factors
- JUN_HUMAN CTCF_HUMAN ZN444_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.37 | 2.42 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.75 | 1.16 | 1.19 | n/a | No Hit | |||
| ZN444_HUMAN | -3.00 | 3.16 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.38 | 1.66 | 1.31 | n/a | n/a | |||
| CDN1B_HUMAN | 0.36 | 1.11 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid