rs12777788 chr10:988288 G>A
- Sequence
ccctcgctcctgaggccctcacac[G/A]ccctccgtggctgacctccaagcc
- ASB in cell types
- HepG2 (hepatoblastoma) neutrophils from periferal blood MOLT-4 (Adult T acute lymphoblastic leukemia) breast tumor
- ASB for transcription factors
- GABPA_HUMAN ESR1_HUMAN RFOX2_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.11 | -0.15 | 1.44 | n/a | No Hit | |||
| ESR1_HUMAN | 2.72 | -4.94 | 2.00 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.10 | -0.26 | 1.50 | n/a | n/a | |||
| SPT5H_HUMAN | 0.92 | -0.60 | 1.00 | n/a | n/a | |||
| KMT2B_HUMAN | 2.76 | -2.50 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Whole_Blood