rs12778987 chr10:132331784 C>A

Sequence
tgccaggccggtcgcccctccaga[C/A]cctcgcggtctctacttgcccgtc
ASB in cell types
ER+ breast tumor 22RV1 (prostate carcinoma) MDA-MB-231 (breast adenocarcinoma)
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.90 -4.14 0.021.00 2.00 n/a No Hit
ESR1_HUMAN -0.05 2.29 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Colon_Transverse,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Spleen,  Thyroid,  Whole_Blood

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