rs1278275 chr10:126062615 A>G
- Sequence
aaataccagctttggtcaccatga[A/G]tcagaggcacacagccagctgagt
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) HCT-116 (colon carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) MDM(monocyte derived macrophages)
- ASB for transcription factors
- TCF21_HUMAN TF65_HUMAN FOSL1_HUMAN JUND_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.11 | n/a | 3.00 | n/a | n/a | |||
| TF65_HUMAN | 1.61 | -4.08 | 2.38 | n/a | No Hit | |||
| FOSL1_HUMAN | -0.31 | 2.07 | 2.00 | 2.23 | Concordant | |||
| JUND_HUMAN | -0.63 | 1.83 | 2.00 | 3.23 | Concordant |
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Motif analysis
