rs12796102 chr11:118791319 C>T
- Sequence
ccgcggcgtcactgccttcctggc[C/T]tggtggtgagaggaagtcgggccg
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) MOLM14 (Adult acute myeloid leukemia) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- TYY1_HUMAN CTCF_HUMAN ZFX_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.06 | 0.23 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.82 | 0.44 | 1.29 | n/a | No Hit | |||
| ZFX_HUMAN | 1.42 | -3.58 | 2.00 | -4.36 | Concordant | |||
| BRD4_HUMAN | 1.14 | 0.42 | 1.43 | n/a | n/a | |||
| CDK8_HUMAN | 1.41 | -0.13 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood