rs12857 chr12:120496143 T>G
- Sequence
gccacggtttcggtagcgacggta[T/G]ctctagccgggcctgagctgtgct
- ASB in cell types
- HepG2 (hepatoblastoma) primary B-CLL cells breast tumor LNCaP (prostate carcinoma)
- ASB for transcription factors
- TBP_HUMAN ESR1_HUMAN BRD4_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | -0.01 | 0.83 | 1.06 | n/a | No Hit | |||
| ESR1_HUMAN | -0.48 | 2.42 | 1.94 | n/a | No Hit | |||
| BRD4_HUMAN | 0.29 | 2.42 | 1.64 | n/a | n/a | |||
| TAL1_HUMAN | -1.82 | 2.22 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood