rs12881545 chr14:100709875 G>C
- Sequence
cgcccctcctccccaacgcgcgcc[G/C]gcagggggcgcggcgggctcgcca
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte HUES64 (embryonic stem cells) spleen
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.52 | 0.98 | 1.54 | -4.58 | Concordant | |||
| RAD21_HUMAN | 2.35 | -1.49 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 1.50 | -0.53 | 1.83 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Stomach, Testis, Whole_Blood