rs12894502 chr14:106872714 A>C

Sequence
tgcacctgctcctgacccggcctc[A/C]tgctctgtgggccccgcgcgcccc
ASB in cell types
HEK293 (embryonic kidney) MCF7L-P(immortalized breast epithelial cell line) prostate gland
ASB for transcription factors
ZN629_HUMAN ZN654_HUMAN KLF9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN629_HUMAN -5.49 3.16 1.007.9·10-3 2.00 n/a n/a
ZN654_HUMAN n/a 2.33 1.009.8·10-3 2.50 n/a n/a
KLF9_HUMAN -4.93 2.83 1.000.01 2.00 2.50 Concordant
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Motif analysis

KLF9_HUMAN Concordant
KLF9_HUMAN pic

Genetic associations

GTEx eQTL Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Spleen,  Stomach,  Whole_Blood

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