rs12903462 chr15:89760844 C>T
- Sequence
gctgagatgtcctgggagacactg[C/T]ctgccttggtgggaaggccccagt
- ASB in cell types
- A549 (lung carcinoma) lymphoblastoid cells GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.02 | 0.66 | 1.20 | n/a | No Hit | |||
| RAD21_HUMAN | 1.03 | 0.51 | 1.15 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pancreas, Testis, Thyroid