rs12908468 chr15:89761005 T>G

Sequence
cctccaatccttaaggacgttttt[T/G]ggggctagggccagaacccaggct
ASB in cell types
A549 (lung carcinoma) foreskin keratinocyte 22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
CTCF_HUMAN SMC3_HUMAN ANDR_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.89 0.57 2.3·10-51.00 1.21 n/a No Hit
SMC3_HUMAN 1.38 0.53 6.8·10-41.00 1.10 n/a n/a
ANDR_HUMAN 2.16 -1.38 0.031.00 3.00 n/a No Hit
RAD21_HUMAN 0.62 0.34 0.031.00 1.27 n/a n/a
ESR1_HUMAN 2.27 -1.33 0.041.00 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Testis,  Thyroid

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