rs12932041 chr16:56860593 G>T
- Sequence
gcatctggggtttctgcttctctg[G/T]ggtttccgcatctgtggtttcctg
- ASB in cell types
- Th1-cells MOLT-4 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RUNX3_HUMAN TBX21_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX3_HUMAN | 2.44 | -2.12 | 1.00 | 6.28 | Discordant | |||
| TBX21_HUMAN | -0.24 | 1.75 | 1.50 | n/a | No Hit | |||
| ELF1_HUMAN | 1.41 | -1.55 | 1.00 | -0.90 | Weak Concordant |
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Motif analysis
