rs12943240 chr17:77495174 A>G
- Sequence
gccggtgacagaaactgtcaggaa[A/G]tgcacaagagagaggtccccgcac
- ASB in cell types
- T47D (invasive ductal carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia) E16 retina
- ASB for transcription factors
- SPI1_HUMAN KDM1A_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.47 | 1.90 | 2.00 | 2.33 | Concordant | |||
| KDM1A_HUMAN | -0.98 | 2.44 | 2.00 | n/a | n/a | |||
| KDM5B_HUMAN | 2.69 | -5.02 | 2.00 | n/a | n/a |
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Motif analysis
