rs12963151 chr18:9404748 C>G
- Sequence
taccggtaattactgcttccaccc[C/G]cagttctaggcaaagagcaaggcc
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- EGR1_HUMAN MITF_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 2.58 | -2.56 | 1.17 | -4.98 | Concordant | |||
| MITF_HUMAN | 2.54 | -2.58 | 1.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -0.83 | 0.83 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Testis