rs12972198 chr19:2394324 C>G
- Sequence
tcacctgagcccatgaggtcgagg[C/G]tgcagtgagcagtgattgtgccac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) Kasumi-1 (acute myeloblastic leukemia) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- IKZF1_HUMAN ELF1_HUMAN SKIL_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -3.62 | 3.87 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -3.61 | 3.29 | 1.00 | n/a | No Hit | |||
| SKIL_HUMAN | -3.35 | 3.39 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | -2.85 | 2.92 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | n/a | 2.55 | 1.50 | n/a | n/a |
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