rs12973734 chr19:38226540 T>C
- Sequence
acacacacacacacacacacacac[T/C]cctctagtcttagaccctttccac
- ASB in cell types
- pancreas A549 (lung carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.99 | 1.70 | 1.53 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg