rs12989257 chr2:70141466 T>C
- Sequence
atgacacaagcacttcaggacata[T/C]tcatgttcctccttccaggacagg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ZBT20_HUMAN ANDR_HUMAN SPT5H_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT20_HUMAN | 2.34 | -2.10 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.50 | -0.01 | 1.88 | n/a | No Hit | |||
| SPT5H_HUMAN | -1.97 | 2.36 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.30 | 0.54 | 1.75 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid