rs13004233 chr2:196269259 A>C
- Sequence
agcacttcgggaggccgaggcggg[A/C]ggatcacctgaggtcaggcattca
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOS_HUMAN THB_HUMAN LMBL2_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | -2.88 | 3.05 | 1.00 | n/a | n/a | |||
| THB_HUMAN | n/a | 3.51 | 2.00 | -0.33 | Weak Discordant | |||
| LMBL2_HUMAN | n/a | 2.88 | 2.00 | n/a | n/a | |||
| ELF1_HUMAN | -1.60 | 1.97 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood