rs13063315 chr3:111859147 G>T
- Sequence
gggcgaactgtcggaaggaggtgc[G/T]gtcacctggagtttcccaatagat
- ASB in cell types
- foreskin keratinocyte GM19238 (female B-cells lymphoblastoid cell lines) HEK293 (embryonic kidney) Detroit 562 (Pharyngeal squamous cell carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.27 | 2.83 | 2.05 | 2.73 | Concordant | |||
| ESR1_HUMAN | 2.36 | -0.60 | 1.83 | n/a | No Hit | |||
| CREB1_HUMAN | 1.58 | -0.11 | 1.25 | n/a | No Hit |
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Motif analysis
