rs13126462 chr4:54498972 G>T

Sequence
acccattcacttggaatgaatgta[G/T]ggtcctggtctgacaggagcctga
ASB in cell types
Detroit 562 (Pharyngeal squamous cell carcinoma) iPS-derived chondrocytes
ASB for transcription factors
TF65_HUMAN RARA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN -0.74 2.01 1.005.8·10-5 1.00 n/a No Hit
RARA_HUMAN 0.18 1.73 1.003.2·10-4 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  obesity with early age of onset (age >2),  urinary albumin-to-creatinine ratio

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