rs13159365 chr5:136053744 C>T
- Sequence
tgcctaactgagctcacctctcct[C/T]cctctcctcctgactggttagatt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) EA.hy 926 (human umbilical vein endothelial cell line) HT29 (colon adenocarcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA1_HUMAN HIF1A_HUMAN PPARG_HUMAN SSXT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.22 | 0.76 | 2.25 | n/a | No Hit | |||
| HIF1A_HUMAN | -1.94 | 2.25 | 2.00 | n/a | No Hit | |||
| PPARG_HUMAN | 1.79 | -0.64 | 1.83 | -2.90 | Concordant | |||
| SSXT_HUMAN | 2.21 | -1.65 | 1.00 | n/a | n/a | |||
| JUN_HUMAN | 1.73 | 0.64 | 2.22 | n/a | No Hit |
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Motif analysis
