rs13160701 chr5:128579366 A>G
- Sequence
tgctagtaattgcattttttgtga[A/G]cctactcattctttatagttactg
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) MDA-MB-231 (breast adenocarcinoma) A549 (lung carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN BRD4_HUMAN JUND_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.33 | 1.84 | 1.17 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.78 | 2.00 | 1.17 | n/a | No Hit | |||
| BRD4_HUMAN | -0.21 | 2.25 | 2.00 | n/a | n/a | |||
| JUND_HUMAN | -2.75 | 2.65 | 1.00 | n/a | No Hit | |||
| TEAD4_HUMAN | n/a | 1.83 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Vagina, Whole_Blood