rs131780 chr22:50544110 C>G

Sequence
ccaggctggtctcgaactgctgac[C/G]tcaggcgatccaacacctcggcct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MEF2B_HUMAN IKZF1_HUMAN ATF7_HUMAN TBX21_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN -2.98 3.29 1.002.3·10-5 1.00 n/a No Hit
IKZF1_HUMAN -1.61 1.39 1.002.9·10-3 1.25 n/a No Hit
ATF7_HUMAN -2.60 2.70 1.005.7·10-3 1.00 n/a n/a
TBX21_HUMAN -0.30 1.81 1.000.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI red blood cell count
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Brain_Caudate_basal_ganglia Brain_Cerebellum Cells_Cultured_fibroblasts Esophagus_Mucosa Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid Whole_Blood

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