rs1318199 chr11:102347161 G>C
- Sequence
tccgctttccggccccagcctccc[G/C]ggcgccctcgcgcggcggctaacg
- ASB in cell types
- RWPE1 (prostate epithelial cells) neutrophils CD34+ stem cells-derived erythroblasts naive IgD+ B cells
- ASB for transcription factors
- CTCF_HUMAN SRBP2_HUMAN TF65_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.86 | -0.15 | 1.40 | 0.20 | Weak Discordant | |||
| SRBP2_HUMAN | 2.63 | n/a | 3.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.97 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg