rs1320042 chr11:7422796 T>C
- Sequence
cctgggtggagtgttgcacacggg[T/C]ccctgagtggcagtatatgcacgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.80 | 3.15 | 1.89 | n/a | n/a | |||
| CTCF_HUMAN | -0.72 | 2.58 | 1.70 | 2.15 | Concordant | |||
| IKZF2_HUMAN | n/a | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
