rs13200858 chr6:49668416 A>G

Sequence
aacaaaatacttgtcattcttcaa[A/G]tatttgctcaggcttttccctcct
ASB in cell types
LNCaP (prostate carcinoma) breast tumor pancreatic ductal adenocarcinoma LNCaP C4-2 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN ESR1_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.83 -0.85 1.2·10-241.00 1.92 n/a No Hit
ANDR_HUMAN 2.72 -1.39 1.8·10-161.00 2.87 n/a No Hit
ESR1_HUMAN 3.75 0.11 8.9·10-60.98 1.50 n/a No Hit
FOXA2_HUMAN 1.35 -1.09 0.021.00 3.38 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP left ventricular wall thickness (lv wall thickness),  refractive error
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Prostate,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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