rs132792 chr22:41666818 C>T

Sequence
cttctaccgcggccatcgcgcttc[C/T]atccgccaggtggcgacacagccg
ASB in cell types
THP-1 (acute monocytic leukemia) macrophages HEK293 (embryonic kidney) RPMI8226 (Plasma cell myeloma)

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
THP-1 (acute monocytic leukemia) 1.05 0.67 3.9·10-40.89 1.02
macrophages n/a 3.33 1.008.3·10-4 2.00
HEK293 (embryonic kidney) 0.67 0.19 2.6·10-31.00 1.97
RPMI8226 (Plasma cell myeloma) -1.61 2.66 1.000.02 2.00
GM12878 (female B-cells lymphoblastoid cell line) 0.46 0.75 0.890.03 1.21
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Amygdala Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

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