rs132847 chr22:45163750 C>G

Sequence
atcctggaagacgcgttgccggcc[C/G]cacgtgagccgacgccccaaagcg
ASB in cell types
HEK293 (embryonic kidney) HL-60 (acute myeloid leukemia) iPS-derived dermal fibroblasts
ASB for transcription factors
GLIS1_HUMAN INT13_HUMAN GLIS2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GLIS1_HUMAN 2.91 n/a 5.8·10-41.00 2.00 n/a n/a
INT13_HUMAN 1.82 n/a 9.6·10-41.00 3.00 n/a n/a
GLIS2_HUMAN 2.25 n/a 4.1·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Visceral_Omentum,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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