rs133017 chr22:38176630 A>C
- Sequence
ttcctgtagctccgtctgtgccac[A/C]cagcacgggagcatgccaccacac
- ASB in cell types
- BEAS-2B (bronchial epithelium) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.17 | 1.57 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, body mass index (bmi), hdl cholesterol, height, infant head circumference, ldl cholesterol, myopia, parkinsons disease, serum creatinine, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood