rs1343122 chr1:48498746 C>A
- Sequence
gccactgcagagttgacagtaacg[C/A]ttgccatggttccttgaggaggga
- ASB in cell types
- MCF10AT1 (breast premetastatic epithelial cells) MCF7L-P(immortalized breast epithelial cell line) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) foreskin keratinocyte
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| MCF10AT1 (breast premetastatic epithelial cells) | -2.48 | 2.73 | 1.00 | |||
| MCF7L-P(immortalized breast epithelial cell line) | 1.71 | 0.13 | 2.00 | |||
| MOLM-13(acute monocytic leukemia(AML), Homo sapiens) | -1.86 | 2.40 | 1.00 | |||
| foreskin keratinocyte | n/a | 0.86 | 2.50 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid