rs1346 chr11:65569780 A>T

Sequence
cacgcagcacccaagggcggctgg[A/T]agcgcaatgcgcgtgcccagtaca
ASB in cell types
HCC1954 (ductal breast carcinoma)
ASB for transcription factors
NRF1_HUMAN ZN189_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN 2.98 0.08 8.4·10-41.00 1.58 n/a No Hit
ZN189_HUMAN 2.36 -2.02 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI heel bone mineral density lumbar spine bone mineral density (integral) optic cup area vertical cup-disc ratio
GRASP body mass index (bmi) fasting blood glucose obesity with early age of onset (age >2) total cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Coronary Artery_Tibial Brain_Cerebellum Brain_Hypothalamus Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Stomach Testis Thyroid Uterus Vagina Whole_Blood

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