rs134847 chr22:45645724 C>T

Sequence
gactccgctgctgcgtggcgcctg[C/T]cctgggacccacgtgcggctaggc
ASB in cell types
CD14+ monocytes foreskin keratinocyte 22RV1 (prostate carcinoma)
ASB for transcription factors
STAT1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.37 -1.11 1.5·10-31.00 2.00 n/a No Hit
ANDR_HUMAN 2.48 -1.47 0.011.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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