rs135167 chr22:37033088 C>T
- Sequence
tcccaaccttgcctaaccagctgc[C/T]ctggaatgttttccacttcctggg
- ASB in cell types
- primary human neonatal keratinocytes
- ASB for transcription factors
- GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 0.12 | 0.78 | 1.39 | 1.38 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP college completion, hematocrit (hct), hemoglobin (hb), ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), mean corpuscular volume (mcv), microalbuminuria, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid