rs1355548 chr3:62666049 T>G
- Sequence
aagagaaggcaccagatgggacag[T/G]gtccctcactggcgtgaatgtagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.27 | 0.34 | 2.46 | -2.28 | Concordant | |||
| STAG1_HUMAN | 0.92 | -0.18 | 1.00 | n/a | n/a |
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Motif analysis
