rs13566 chr1:16618914 T>A
- Sequence
ggatgctggaaaccgcgggatagc[T/A]cggtggagagagggcgctcctgct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) WA09 (embryonic stem cells) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN ANDR_HUMAN TP53B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.25 | 0.98 | 1.94 | n/a | n/a | |||
| CTCF_HUMAN | 1.70 | 0.24 | 2.73 | 2.63 | Discordant | |||
| ANDR_HUMAN | 2.79 | -4.99 | 2.50 | n/a | No Hit | |||
| TP53B_HUMAN | 2.86 | n/a | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 2.41 | -5.29 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
