rs1359591 chr1:8879251 G>A
- Sequence
ccccactccggggttggggcgctg[G/A]ccccgccgcagcgctgcgtgtccg
- ASB in cell types
- HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- GCR_HUMAN TYY1_HUMAN COT1_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.51 | 1.72 | 1.18 | n/a | No Hit | |||
| TYY1_HUMAN | -3.85 | 2.87 | 2.00 | n/a | No Hit | |||
| COT1_HUMAN | -2.13 | 2.13 | 1.00 | 2.23 | Concordant | |||
| RBM25_HUMAN | -4.65 | 2.61 | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | -2.41 | 2.73 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid