rs136209 chr22:36361157 C>T

Sequence
ccaggaggtaggagctgaagactg[C/T]gggtgggccccccttccctttcca
ASB in cell types
MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
ASB for transcription factors
GATA3_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA3_HUMAN -1.89 2.19 1.009.2·10-4 1.00 n/a No Hit
FOXA1_HUMAN 0.04 1.74 1.000.01 1.53 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Thyroid,  Whole_Blood

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